species:   Rhsol
pid:       PID0541
parent:    Rhi-milR-58
paralog:   
locus:     KB317721.1:245781-245852
matures:   ['CGUGAACGAGAACGAGAGCGGG', 'CGCGAACGUGAACGUGAACGCGAC']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317721.1:245781-245852

1 out of bounds
1 alignments
1 proper strand
1 stranded perfect matches

                 ***************************************                
UUCGGCCAUUCGUGAACGAGAACGAGAGCGGGAUUCGAUGCCCCGCGAACGUGAACGUGAACGCGACCUGAU
.((((....(((((.(((...(((...(((((.........)))))...)))...)))...))))).)))).
----------CGUGAACGAGAACGAGAGCGGG---------------------------------------- l=22 a=0 c
-------------------------------------------CGCGAACGUGAACGUGAACGCGAC----- l=24 a=0 c*
--------------------------------------UGCCCCGCGAACGUGAAC---------------- l=18 a=1 ma
-------------------GAACGAGAGCGGGAUUCG----------------------------------- l=18 a=0 ma*

--------------------------------------UGCCCCGCGAACGUGAAC---------------- l=18 a=1 (ma)

mb-01010
ax-1001101
ku-01
ss-100011101110
fn-011
